SAMMate Changelog
What's new in SAMMate 2.7.1
Jun 23, 2012- New features:
- Supports edgeR to detect differentially expressed genes and isoforms.
- Supported simultaneous multiple instances of SAMMate runs.
- Users can export P-values to transcript expression file.
- Enhancements:
- In the Work Space, added two group tabs to separate files into two groups.
- In the Options dialogue, added R Options to configure R information.
- Bug fixes:
- When input SAM and BAM files simultaneously, missing information in Report.html
- Fixed the 32bit problem on Linux 64bit OS.
- Fixed the parsing problem of some GFF3 annotation files.
New in SAMMate 2.5 (Apr 3, 2011)
- New features: Isoform-level transcriptome quantification
- RAEM-Read Assignment via EM (Deng et al. 2011, Nucleic Acids Research, doi: 10.1093/nar/gkr042)
- One-step iQuant (isoform Quantification, manuscript in preparation)
- Iterative iQuant (isoform Quantification, manuscript in preparation)
- Output read counts for detecting differentially expressed genes, e.g. using edgeR
- Enhancements:
- Optimized memory allocation
- New 'Options' dialogue
- More intuitive mouse events