What's new in ASAP 0.1.2
Jun 17, 2013
- Added an extra check for single-end and paired-end files which prevents error messages when a chromosome is not present in equivalent genomes (e.g. if one genome does not have MT as a chromosome).
- Fixed a counting bug for --dissimilar alignment mode where sequences aligning equally well to both genomes were counted for "multiple alignments to the same genome" instead of "aligning equally well to both dissimilar genomes". This should now work
- as intended in both single-end and paired-end mode.
- Removed the requirement of paired-end sequences to have identical sequence IDs.
- Increased the chunkmbs default size to 512MB (up from 256).