Java tool to create MSMS ion images #Create ion image #MSMS image #Ion image creator #Create #MSMS #Ion image
MSIReconstructorMSMS is an easy to use, free, simple tool that helps you create MSMS ion images from MSI on stretched images.
The stretched sample bead positions are normally identified from a thresholded optical image of the sample using ImageJ software with the Threshold_Colour plugin.
Pixel coordinates can be obtained in ImageJ by changing the Analyze-->Set Scale-->Unit of Length parameter to pixel. Using the Analyze-->Analyze Particles command generates a list of bead coordinates.
The input text file should consist of the stretched bead X-Y positions in pixel coordinates, in two columns that are delimited by either tabs or spaces. The left column has X-coordinates and the right column has Y-coordinates.
System requirements
MSIReconstructorMSMS 1.0
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- Mac OS X (-)
- file size:
- 1 KB
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