Compute and visualize protein graphs #Compute protein graph #Protein graph viewer #Protein graph visualizer #View #Compute #Protein graph
VPLG, or Visualization of Protein-Ligand Graphs is a unique, easy to use tool that uses a graph-based model to describe the structure of proteins on the super-secondary structure level.
A protein-ligand graph is computed from the atomic coordinates in a PDB file and the secondary structure assignments of the DSSP algorithm.
In this graph, vertices represent secondary structure elements (SSEs, e.g. usually alpha helices and beta sheets) or ligand molecules while the edges model contacts and spatial relations between them.
VPLG is written in Java using the Apache Batik library for SVG output and can run on multiple platforms.
System requirements
What's new in VPLG 2012.10.11:
- New features compared to the old version here include:
- a new graphical user interface written in Java/Swing
- database structure changes & security improvements
- support for gzipped input files
VPLG 2012.10.11
add to watchlist add to download basket send us an update REPORT- runs on:
- Mac OS X (-)
- file size:
- 7.8 MB
- filename:
- vplg_2012_10_11.zip
2 screenshots:
- main category:
- Math/Scientific
- developer:
- visit homepage
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