Package for exact stochastic simulation of reaction-diffusion systems #Stochastic simulation #Simulation model #Simulation engine #Simulate #Engine #Model
STEPS is a free and open source package for exact stochastic simulation of reaction-diffusion systems in arbitrarily complex 3D geometries.
The core simulation algorithm is an implementation of Gillespie's SSA, extended to deal with diffusion of molecules over the elements of a 3D tetrahedral mesh.
While STEPS was mainly developed for simulating detailed models of neuronal signaling pathways in dendrites and around synapses, it's also a general tool and can be used for studying any biochemical pathway in which spatial gradients and morphology are thought to play a role.
System requirements
What's new in STEPS 2.1.0:
- Add steps.geom.castToTmComp and steps.geom.castToTmPatch methods for casting Comp and Patch objects to their TetMesh counterpart (if possible).
- Added direct connection between TetODE and E-Field. Previously connection was possible
- only through the python interface.
- Other small additions such as optional percentage of starting nodes tested for mesh breadth first search in E-Field setup.
STEPS 2.1.0
add to watchlist add to download basket send us an update REPORT- runs on:
- Mac OS X (PPC & Intel)
- file size:
- 7.7 MB
1 screenshot:
- main category:
- Math/Scientific
- developer:
- visit homepage
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