mRNA to Genome Alignments using Large Margin Algorithms #Align genome #Genome aligner #Sequence aligner #Align #Aligner #Genome
PALMA aligns two genomic sequences in an optimal way according to its underlying algorithm and trained parameters. The main Python script takes two FASTA files containing the target (e.g. a DNA sequence, part of the genome) and query sequences (e.g. a cDNA or EST sequence).
PALMA creates an alignment using dynamic programming (written in c++), and returns the alignment in a psl like format.
The algorithms will be the ones that will compute optimal local alignments, so if no alignment has been found it is because no alignment got a sufficiently high alignment score.
PALMA 0.3.7
add to watchlist add to download basket send us an update REPORT- runs on:
- Mac OS X (PPC & Intel)
- file size:
- 4.4 MB
- filename:
- palma-0.3.7.tar.gz
- main category:
- Math/Scientific
- developer:
- visit homepage
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