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CopySeq For Mac

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Utility that analyzes the depth-of-coverage of high-throughput DNA sequencing reads, and which can integrate paired-end and breakpoint junction analysis based CNV-analysis approaches #Analyze reads  #Dna sequence reads  #Dna sequence analysis  #Dna sequence  #Analysis  #Reader  

Description

Free Download

CopySeq screenshot

CopySeq revealed that OR loci show an extensive range of locus copy-numbers across individuals, with zero to two copies in some OR loci, and two to nine copies in others.

Among genetic variants affecting OR loci we identified deleterious variants including CNVs and SNPs affecting ~15% and ~20% of the human OR gene repertoire, respectively, implying that genetic variants with a possible impact on smell perception are widespread.

CopySeq can ascertain genomic structural variation in specific gene families as well as at a genome-wide scale, where it may enable the quantitative evaluation of CNVs in genome-wide association studies involving high-throughput sequencing.

CopySeq is developed using the Java programming language and can be run on Mac OS X, Windows and Linux.

System requirements

  • Java 1.6 or later
  • Java 1.6 or later
  • Java 1.6 or later
  • Java 1.6 or later
  • R 2.11 or later
  • R 2.11 or later
  • R 2.11 or later
  • R 2.11 or later
  • Jim Kent's twoBitToFa program
  • Jim Kent's twoBitToFa program
  • Jim Kent's twoBitToFa program
  • Jim Kent's twoBitToFa program
  • Human genome (hg18) in .2bit file format
  • Human genome (hg18) in .2bit file format
  • Human genome (hg18) in .2bit file format
  • Human genome (hg18) in .2bit file format

CopySeq 1.7.1

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  runs on:
Mac OS X (-)
  file size:
2.7 MB
  filename:
copyseq.tar.gz
  1 screenshot:
CopySeq - Usage screen for the application when running it from a Terminal window.
  main category:
Math/Scientific
  developer:
  visit homepage

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