What's new in PathVisio 3.2.1 Build 4025
Oct 7, 2015
- Bug fix release
- Started code cleanup
- PathVisio core lib now also reads information about ontology tags
- Bug fixes: #1781, #1787, #1794
New in PathVisio 3.2.0 Build 3999 (Mar 2, 2015)
- Bug fix release
- Issues with Java 8 have been resolved
- Code signing certificate provided by NRNB (via the Cytoscape Consortium non-profit organization) is now used - Java security issues resolved
- Bug fixes in the data import module and statistics module
- Improvements in the plugin manager interface
- New page for available key shortcuts in PathVisio: http://www.pathvisio.org/documentation/shortcuts/
New in PathVisio 3.1.3 Build 3968 (Jun 6, 2014)
- Bug fix release
- GeneOntology terms are now removed from Search results for annotations
- DataNodes need to be annotated with ID and Datasource or nothing (saving data nodes with only ID or datasource is not allowed anymore)
New in PathVisio 3.1.2 Build 3950 (Oct 31, 2013)
- Major bug in file import module fixed:
New in PathVisio 3.1.1 Build 3945 (Oct 7, 2013)
- New data tab: show imported expression data
- Lots and lots of bug fixes and improvements
New in PathVisio 3.1.0 (Aug 27, 2013)
- Plugin manager improvements - browse feature by category, status information
- Advancements in legend tab: missing data and criteria not met are added
- Bug fix: External references for lines will show up immediately
- Several bug fixes
New in PathVisio 2.0.10 (Jan 27, 2011)
- New way of drawing rounded rectangles to avoid stretching effect
- Various small bug fixes
New in PathVisio 2.0.9 (Nov 20, 2010)
- New connector type for connector of arbitrary length and arbitrary angles
- New "cellular component" property for storing the biological meaning of a compartment
- New "double" line type (especially useful for double-membraned organelles)
- Clickable hyperlinks in pathways
- see milestone:"milestone_27" for a complete list of bug-fixes
New in PathVisio 2.0.8 (Aug 30, 2010)
- Improved shapes for cellular components
- A few usability improvements such as copy / paste in the popup menu
- see milestone:"milestone_26" for a complete list of bug-fixes
New in PathVisio 2.0.7 (Jul 31, 2010)
- toolbar icons and new side panel to make it easier to select arrow types and shapes (thanks liubing)
- Pathway databases are included as data source, so that you can add links from one pathway to another
- BioPAX converter has been improved and produces more valid BioPAX documents.
- new connector type where individual points can be manipulated (thanks leonth)
- Number of data sources has been increased to over 180
- see milestone:"milestone_25" for a complete list of bug-fixes
New in PathVisio 2.0.6 (Jun 21, 2010)
- The number of anchors on a shape can be increased from the default 12.
- A legend of the data visualization can now be shown on the pathway image itself. Previously it was only visible in a side panel.
- see milestone:"milestone_24" for a complete list of bug-fixes
New in PathVisio 2.0.5 (May 3, 2010)
- Datanodes can now have states to represent e.g. phosphorylation and other protein modifications
- see milestone:"milestone_23" for a complete list of bug-fixes
New in PathVisio 2.0.4 (Mar 5, 2010)
- improved text formatting of shapes, labels and datanodes
- many more shapes for datanodes
- simple pixel coordinates
- set background color on datanodes
New in PathVisio 2.0.3 (Feb 5, 2010)
- Invisible anchors are really invisible, at least when something is connected to them (Thanks to Margot)
- Extra -v command line option (thanks to Mark)
- Currently selected database is displayed properly in the status bar again
- Many new extension points for plugin developers
- see milestone:"milestone_21" for a complete list of bug-fixes
New in PathVisio 2.0.2 (Jan 9, 2010)
- data visualization: behavior of rows in a split gene box is more predictable
- dragging an anchor along a complex path is more smooth
- added hooks to give plugins more freedom to modify the preference panel
- improved speed of identifier search when using BridgeWebservice? as back-end
- see milestone:"milestone_20" for a complete list of bug-fixes
New in PathVisio 2.0.1 (Nov 27, 2009)
- Improved algorithm for automatic connectors that point to an anchor.
- Improved drawing of arrow types that have a short "gap" at the end.
- Because the thawte freemail service has been cancelled, we updated our Security Certificate
- The Pathway History viewer had a bug where each line was considered modified, even if it wasn't. This has been fixed.