Maltcms Changelog
What's new in Maltcms 1.3.2
Oct 22, 2014- Changes:
- Improvements:
- Added support for import of GcImage Blob Reports in csv format as peak data in `maltcms.commands.fragments2d.io.csv.GcImagePeak2DImporter`
- Fixed an issue in `MZMLExporterWorker` where validation would fail, if file names started with numbers.
- Added support in `Peak2D` for reading and writing of peak lists from and to netcdf. Refactored and simplified `SeededRegionGrowing` to primarily use the `IChromatogram2D` interface.
- Updated documentation.
- API Changes:
- Removed extra steps in `SeededRegionGrowing`, thereby removing a number of configuration options. Alignment can now be performed by `PeakCliqueAlignment`. Example pipelines have been adapted accordingly.
- Peak finding classes have been refactored to share large amounts of similar code, this may require adaptation of the pipeline configurations.
- Extended IChromatogram2D interface to allow retrieval of 2D time bound region. A list of non-compatible API changes can be found for each module in the module
New in Maltcms 1.3.0 (Sep 25, 2013)
- Improved [BiPACE and BiPACE2D](./bipace2d.html) pipelines for alignment of peak lists from 1D and 2D chromatography-mass spectrometry.
- Maltcms artifacts now expose osgi dependency information and can be deployed in osgi-compatible runtime containers. The maltcms-osgi-distribution module lists all required dependencies. Services are not yet exposed!
- The maltcms-nbm module provides NetBeans Rich Client Platform compatible modules. Preliminary support for Agilent Chemstation _.D_ directories with peak reports in '.xls' format.
- MS/N Support for mzML, also available for custom NetCDF format via ms_level variable, integrated in Chromatogram abstractions in the maltcms-datastructures module.
- Preliminary Support for extraction of mzML TIC chromatograms via total_ion_current_chromatogram and total_ion_current_chromatogram_scan_acquisition_time.
- New optional caching system for lower memory footprint using Ehcache.
- Transcoding support from netCDF to mzML and vice versa.