What's new in 3DNA 2.1
Nov 1, 2013
- updated README files and scripts in X3DNA/examples/ to v2.1 (a long overdue!), plus various other minor revisions.
- fixed a bug in rotate_mol/frame_mol (thanks to a bug report by Pascal Affinger); updated baselist.dat with nucleic-acid-containing entries in the PDB (as of June 7, 2013).
- updated baselist.dat with nucleic-acid-containing entries in the PDB (as of May 1, 2013); revised rotate_mol and frame_mol so that atom/residue names in the original PDB file are preserved.
- refined structure classification method to avoid false assignments of uncommon types (e.g., B-Z junction, W-form left-handed DNA) to structures with many non-canonical base pairs.
- DSSR beta-r08-on-20130323 released: refined algorithm for detecting multiplets, revised the header section to output the numbers of DNA/RNA chains, nucleotides, waters, and metals. As of this release, it appears safe to say that DSSR-beta contains all the basic features and has been well tested. The program is ready serve as a handy tool for RNA structure analysis.
- 3DNA v2.1 has been updated with baselist.dat and atomlist.dat to accommodate all DNA/RNA entries in the latest PDB, plus minor code refinements.