coalescent 1.3.0 - Changelog

What's new in coalescent 1.3.0:

December 11th, 2010

· streamlined the input architecture much.

What's new in coalescent 1.2.1:

December 7th, 2010

· Check phylogeny using Gusfield`s Algorithm ID:512797923
· Compute genealogies in Recursion ID:1256846304
· countGenealogies(): this is always computed. For exact, this counts all geanlogies used in both exact and sampling based methods. In the eaxct, all are distinct but in the latter duplicates are possible.
Compute genealogies in Recursion ID:
· rememberGenealogies(boolean), when enabled, remembers the genealogies computed in next computation.
· genealogies(): List, when enabled returns the genealogies used, else an empty list. In exact implementation this keeps all the genealogies and in sampling based approximate methods this returns the distinct genealogies sampled.
· nclude GT94 data in files. ID: 2089265130

What's new in coalescent 1.1.0:

October 28th, 2010

· Exact Recursion for K69 ID: 1102 Started: 10/8/10 Closed: 10/26/10 Status: CLOSED

What's new in coalescent 1.0.3:

October 11th, 2010

· Implement exact computation of the probability recursion for KC64.

What's new in coalescent 1.0.2:

October 6th, 2010

· An.applyCoalescent():Iterator . ExactRecursion is modified to use this feature.

What's new in coalescent 1.0.0:

September 1st, 2010

· An exact implementation of the probability recursion for model KC64 and statistic An.
· It also prints out the configurations that are computed during the recursion.