VarScan Changelog
What's new in VarScan 2.3.1
Aug 13, 2012- Expanded VCF compatibility for filter, somaticFilter, and processSomatic commands Extended the optional VCF fields for mpileup2snp, mpileup2indel, and mpileup2cns output to include all VarScan fields
- Made it possible to provide a list of sample names for VCF output for mpileup2* commands.
- Expanded copyCaller functionality to filter by depth and output candidate homozygous deletions
- Fixed a bug in the indel-filtering functionality of the filter command
- Fixed European locale parsing errors in the copyCaller command
New in VarScan 2.2.11 (May 2, 2012)
- base quality parsing fix and VCF output option for somatic mutations.