What's new in AMOS 3.1.0
Oct 8, 2013
- Versioning of AMOS Banks -- all old banks require rebulding
- Sample data available at: http://sourceforge.net/projects/amos/files/sample_data/
- Added FRCurve pipeline for comparing multiple assemblies of the same data: http://amos.sf.net/frcurve/
- New version of Hawkeye using Qt 4 (removed Qt 3 version completely)
- make-consensus now handles ambiguous N bases (reported by Mark Rose).
- Moved undocumented/prototype code into Experimental directory. Use configure --enable-Experimental to build
- Many small updates and bug fixes
New in AMOS 3.0.1 (Oct 8, 2013)
- Release for Bambus 2 paper
New in AMOS 3.0.0 (Oct 8, 2013)
- New version of the scaffolder, Bambus 2.0
- New lightweight, parametrable assembler based on Minimus, Minimo
- Experimental support for Qt 4 in Hawkeye
- Updated unitigger for Minimus, Unitigger
- Compute the complexity of a genome with genome-complexity
- Utility that can convert large fastq files into a bank, fast2amos
- Ability to build only core AMOS binaries with Autoconf
- Support for writing SAM format in bank2contig
- toAmos now automatically reads mate pairs in FASTA files (reads ending in /1 or .1)
- libSlice - correctly compute consensus even with very deep coverage
- Many small updates and bug fixes
New in AMOS 2.0.8 (Oct 28, 2008)
- Build fixes for compatibility with GCC 4.3 and Solaris.