COHCAP is a reliable, accessible and utility that makes use of the City of Hope CpG Island Analysis Pipeline algorithm to analyze single-nucleotide resolution methylation data.
COHCAP is a tool that manages to provide differential methylation for CpG Sites / Islands, QC metrics and integration with gene expression data.
COHCAP is developed using the Java programming language and can be run on Mac OS X, Windows and Linux.
Here are some key features of "COHCAP":
- Analyze DNA methylation
- Graphic User Interface for basic users
- bug patch to assist with analysis of 27k methylation data; update 27k annotation file