Java library to parse various mass-spectrometry peak list formats ready to be used with mzIdentML
At the moment, jmzReader contains parsers for
· PRIDE XML
All parsers are optimized to be used in conjunction with mzIdentML.
In addition, the jmzReader library comes with an additional tool: the jmzReader GUI.
jmzReader GUI is an easy to use application that allows you to visualize peak list files.
jmzReader GUI supports all file formats supported by the jmzReader library and demonstrates the usage of the jmzReader interface.
What's more, jmzReader GUI can export all of the supported file formats into the commonly used mgf format.
Detailed instructions on how to install and use the jmzReader utility on your Mac are available HERE.
jmzReader is a cross-platform utility capable of running on any operating system that comes with Java support (e.g. Mac OS X, Windows, Linux).
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What's New in This Release:
- NEW FEATURE: Added more detailed error messages in case a spectrum cannot be parsed.
- NEW FEATURE: Updated to use mzxml-parser 1.3.2