Ulla for Mac

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A straightforward command line utility that enables you to calculate environment-specific substitution tables from environmental class definitions and sequence alignments




Ulla is capable to read protein sequence alignments and local environment annotations. Thanks to Ulla you can generate a substitution table for a wide variety of combinations of environment features.

Additionally, Ulla can generate heat maps fro substitution tables in order to view and estimate the degree of conservation of amino acids under the environmental restraints.

Ulla is capable to read multiple sequence alignments and annotations for local environments in JOY template format and you can provide your own definition of the environment features.
Last updated on January 24th, 2014
Ulla - This is ulla's usage message displayed in a Terminal window on OS X.

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