Tool to view and analyze mapped sequence data. #View sequence data #Analyze sequence data #Sequence data analysis #Viewer #Sequence data #Analyzer
SeqMonk is a free and open source tool for viewing and analyzing mapped sequence data.
SeqMonk was initially written to cope with remapping experiment data from next generation sequencers, but could be applied to any dataset consisting of a series of mapped genomic regions.
The SeqMonk app also allows you to visualize the positions of your mapped regions against an annotated genome and to quantify the data in order to make comparisons between data sets.
System requirements
What's new in SeqMonk 0.32.0:
- Added a duplication plot which provides an easier way to get as assessment of the level of technical (as opposed to biological) duplication in your data. The idea for the basic structure of the plot was taken from dupRadar (http://sourceforge.net/projects/dupradar/) which is a bioconductor package which allows this type of plot to be created in a more automated fashion.
- Added a binomial for/rev statistical test which is useful for comparing bisulphite datasets where there is an overall change in the level of methylation between your samples, and you want to know which points change to an unusual level rather than just finding ones which change at all.
- Changed the auto create groups/set tool to operate sequentially so a data set won't be added to more than one group.
- Fixed a bug where gff3 files in custom genomes weren't being loaded.
SeqMonk 0.32.0
add to watchlist add to download basket send us an update REPORT- runs on:
- Mac OS X 10.5 or later (-)
- file size:
- 6.3 MB
- filename:
- seqmonk_v0.32.0.dmg
7 screenshots:
- main category:
- Math/Scientific
- developer:
- visit homepage
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