SearchGUI icon

SearchGUI For Mac

4.1/5 8
Certified 100% FREE Apache   

A free and open source, easy to use graphical user interface that will enable you to configure and run proteomics identification search engines. #Proteomics identification  #Open Mass Spectrometry  #OMSSA search GUI  #Spectrometry  #Proteomics  #OMSSA  

Description

changelog

Free Download

SearchGUI is an open-source project serving as a common interface for proteomics search and de novo engines, allowing you to configure and run multiple engines at the same time. It supports X! Tandem, MS Amanda, MyriMatch, MS-GF+, OMSSA, Tide, Comet, Andromeda, Novor, MetaMorpheus, and DirecTag.

Intended to simplify the task of using several search engines at the same time via a graphical user interface, SearchGUI can also be used from the command-line, and it can be added to various analysis pipelines. The program is Java-based, and it is available for Mac, Windows, and Linux.

As far as input formats are concerned, the software supports mzML and mgf files as data sources. ThermoRawFileParser is built-in, which allows you to easily convert Thermo raw files into mzML or mgf.

From the main user interface, you can load spectrum files and search settings, then set the preferred output folder. Pre-processing and post-processing can optionally be run. Finally, you can select the search engines you would like to use and configure them independently. Note that some engines are only available on certain operating systems.

Once the results have been provided, they can be viewed and interpreted using a specialized application, such as PeptideShaker.

System requirements

top alternatives FREE

SearchGUI 4.3.7

add to watchlist add to download basket send us an update REPORT
  runs on:
macOS (Intel only)
  file size:
306.1 MB
  filename:
SearchGUI-4.3.7-mac_and_linux.tar.gz
  3 screenshots:
SearchGUI - From SearchGUI's main window you will be able to choose the search engines, the spectrum and settings files and the output folder.SearchGUI - After the search is conducted, you can view and analyze the scanning log and save the generated report.SearchGUI - By accessing the Search Settings menu, you can load and modify a settings file and choose a database to work with.
  main category:
Math/Scientific
  developer:
  visit homepage
User Comments
This enables Disqus, Inc. to process some of your data. Disqus privacy policy