Swiss-PdbViewer icon

Swiss-PdbViewer For Mac

3.3/5 23
Certified 100% CLEAN Freeware   

A streamlined and feature-rich GUI-based application designed to analyze several proteins and nucleic acid structures simultaneously. #Protein analysis  #Protein analyzer  #View protein  #Analysis  #Protein  #Structure  

Description

changelog

Free Download

Swiss-PdbViewer is a free and cross-platform scientific software application for analyzing multiple proteins concurrently. You will be able to view and analyze protein and nucleic acid structures from a friendly user-interface.

In order to compare the active sites of the proteins, they can be superimposed. Moreover, you can easily calculate amino acid mutations, H-bonds angles and distances between atoms.

Using Swiss-PdbViewer, you can also connect to the Swiss-Model, which is an automated homology modeling server. Because it is possible to thread a protein primary sequence onto a 3D template, the amount of work is greatly reduced.

You can immediately check how well the threaded protein will be accepted by the reference structure before submitting a request.

Another important feature is the ability to read electron density maps and to build into the density. Residues can also be mutated. Swiss-PdbViewer can even produce ray-traced quality images by generating POV-Ray scenes from the current view.

Detailed instructions on how to install and use the Swiss-PdbViewer utility on your Mac are available developer's website.

What's new in Swiss-PdbViewer 4.1.0:

  • The major change compared to 4.04 is the abandon of the default non openGL rendering mode which was causing various color issues on recent Apple hardware.
  • New tool: Possibility to detect hydrophobic patches, see tutorial
  • New tool: Detection of grooves (open cavities)
  • New tool: Detection of contact surfaces, see tutorial
Read the full changelog

Swiss-PdbViewer 4.1.0

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  runs on:
Mac OS X (PPC & Intel)
  file size:
13.2 MB
  filename:
SPDBV_4.1.0_OSX.zip
  11 screenshots:
Swiss-PdbViewer - You can view and analyze protein structures and structural alignments.Swiss-PdbViewer - The Edit menu provides access to the scripts, script commands and lets you search for sequences.Swiss-PdbViewer - By accessing the Select menu, you can group kinds, properties, access secondary structures and more.Swiss-PdbViewer - screenshot #4Swiss-PdbViewer - screenshot #5Swiss-PdbViewer - screenshot #6Swiss-PdbViewer - screenshot #7Swiss-PdbViewer - screenshot #8Swiss-PdbViewer - screenshot #9Swiss-PdbViewer - screenshot #10Swiss-PdbViewer - screenshot #11
  main category:
Math/Scientific
  developer:
  visit homepage

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