Cross-platform tool for biological rule-based modeling, simulation, and visualization
The rule-based languages for describing intracellular biochemistry allow for the construction and simulation of detailed models with unprecedented scope and precision.
We can use rule-based Models to suggest new hypotheses and new ideas for future experimentation. Rule-based models can be difficult to understand and time consuming to debug.
The RuleBender application is a free utility that allows you to construct, debug, simulate and analyze rule-based biological models in the BioNetGen language.
Detailed instructions on how to use the RuleBender utility on your Mac are available HERE.
RuleBender is cross-platform and it works on Mac OS X, Windows and Linux. Binaries for the Windows and Linux platforms are available on the project's homepage.
- Model Construction and Simulation
- Model Visualization: Interactive Contact Map
- Model Visualization: Interactive Influence Graph
- Results Analysis
- Species Graph
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What's New in version 2.0.320
- BioNetGen 2.2.4
- NFSim 1.11
- Persisted Contact Map layouts
- Cleaner console management