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RDP Classifier For Mac

3.8/5 19
Certified 100% FREE GPL   

An open surce and free Naive Bayesian classifier that can rapidly and accurately provide taxonomic assignments from domain to genus. #Classify rna sequence  #Classify bacterial sequence  #Classify archael sequence  #Classifier  #Classification  #Sequence  

Description

changelog

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RDP Classifier is a naive Bayesian classifier which was developed to provide rapid taxonomic placement based on rRNA sequence data.

The RDP Classifier can rapidly and accurately classify bacterial 16s rRNA sequences into the new higher-order taxonomy proposed by Bergey's Trust. It provides taxonomic assignments from domain to genus, with confidence estimates for each assignment.

The RDP Classifier is not limited to using the bacterial taxonomy proposed by the Bergey's editors. It worked equally well when trained on the NCBI taxonomy. The RDP Classifier likely can be adapted to additional phylogenetically coherent bacterial taxonomies.

RDP Classifier will allow you to easily assign 16S rRNA gene sequences to the new phylogenetically consistent higher-order bacterial taxonomy proposed by Garrity et. al.

Hierarchical taxa is based on a naive Bayesian rRNA classifier. The newly trained classifier allows classification of both bacterial and archaeal 16S rRNA sequences.

What's new in RDP Classifier 2.12:

  • The Bacteria and Archaea hierarchy model used by RDP Classifier has been updated to training set No. 16. The new version has over 300 new genera and 2000 new sequences added. There are some rearrangements in genera Gp1, Gp3 and Gp4 of the Acidobacteria.
  • Fungal ITS Warcup has been updated to Version 2. Version 2 of the Warcup training set provides more accurate and consistent classification of fungal ITS sequences. These improvements result from an effort to find and correct a number of small errors and inconsistencies that were present in the reference data used to build the V1 training set.
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RDP Classifier 2.12

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  runs on:
Mac OS X (-)
  file size:
162.2 MB
  1 screenshot:
RDP Classifier - Usage screen for the application when running it under a terminal window.
  main category:
Math/Scientific
  developer:
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