ProteoIDViewer 1.2

Proteomic data analysis tool in Java
ProteoIDViewer - From ProteoIDViewer's main window you will be able to open and analyze mzIdentML, OMSSA and Tandem files.
  7 Screenshots
ProteoIDViewer is a free and open-source GUI that allows the experimental proteomics community to use the mzIdentML standard.

ProteoIDViewer aims to simplify proteomics data sharing for laboratory scientists to solve one of the main difficulties to open proteomic data analysis and large scale data sharing (

The laboratory scientists are the main users of the mzIdentML Viewer which does not require bioinformatics support to get started. The viewer can be simply downloaded and installed with no complex setup procedures.

ProteoIDViewer provides intuitive and useful views of peptides/proteins and the search metadata.  moreover, the software calls any of the functions within mzIdentML Library, and exporters to spreadsheets.

ProteoIDViewer is a cross-platform utility capable of running on any operating system that comes with Java support (e.g. Mac OS X, Windows, Linux).

Main features:

  • Protein-view: all proteins identified and the supporting peptide evidence for each identification
  • Spectrum-view: ranked identifications for each input spectrum and peptide fragmentation data.
  • Peptide-view: all peptides identified, and potential protein mappings for each peptide
  • Global-view: global statistics include total peptide-spectrum matches, FDR, in addition to plotting FDR data into graphs for better visualisation.
  • Protocols-view: spectrum identification protocol and protein detection protocol data

last updated on:
April 5th, 2013, 3:58 GMT
file size:
23.8 MB
developed by:
ProteoIDViewer Team
license type:
operating system(s):
Mac OS X
binary format:
Home \ Math/Scientific
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7 Screenshots
ProteoIDViewer - From the Protein DB View you can view an analyze the DB sequence's ID and accession.ProteoIDViewer - By accessing the Global Statistics tab, you can generate various graphs like the FDR graph, the TV vs FP VS E-value graph and the TP vs Q-value graph.ProteoIDViewerProteoIDViewerProteoIDViewerProteoIDViewer

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