POY 5.1.1

Phylogenetic analysis of DNA and other data using dynamic homology
POY is an open source, easy to use phylogenetic analysis application that supports multiple kinds of data (e.g. morphology, nucleotides, genes and gene regions, chromosomes, whole genomes, etc).

POY is particular in that it can perform true alignment and phylogeny inference (i.e. input sequences need not to be prealigned).

Insertions, deletions, and rearrangements, can then be included in the overall tree score (under Maximum Parsimony), or in the model (under Maximum Likelihood).

A variety of heuristic algorithms have been developed for this purpose and are implemented in POY.

Detailed instructions on how to install and use the POY utility on your Mac are available HERE.

last updated on:
January 15th, 2014, 22:04 GMT
file size:
51.5 MB
price:
FREE!
developed by:
American Museum of Natural History
license type:
GPL 
operating system(s):
Mac OS X
binary format:
Intel only
category:
Home \ Math/Scientific

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4 Screenshots
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What's New in This Release:
  • Bugs Fixed:
  • command swap(parallel) had issues with convergence and filtering trees.
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