Modeller - Comparative modeling of protein 3D structures. #Comparative modeling #Protein structure #Sequence database #Modeling #Protein #Structure
MODELLER is used for homology or comparative modeling of protein three-dimensional structures. The user provides an alignment of a sequence to be modeled with known related structures and MODELLER automatically calculates a model containing all non-hydrogen atoms.
MODELLER implements comparative protein structure modeling by satisfaction of spatial restraints, and can perform many additional tasks, including de novo modeling of loops in protein structures, optimization of various models of protein structure with respect to a flexibly defined objective function, multiple alignment of protein sequences and/or structures, clustering, searching of sequence databases, comparison of protein structures, etc.
Note: In order to use the program you need to register first. The application is free for academic use only.
What's new in Modeller 9.14:
- The new PDB format (PDBx/mmCIF) is now handled.
- Templates can be mmCIF files, and model.read() and model.write() also support mmCIF. See also automodel.set_output_model_format() to write out models in mmCIF format.
- automodel-generated PDB or mmCIF files now contain extra header information, including the names of the sequence and template(s) and the values of any assessment scores.
- Add Python 3.4 support.
Modeller 9.14
add to watchlist add to download basket send us an update REPORT- runs on:
- Mac OS X (Intel only)
- file size:
- 32.5 MB
- filename:
- modeller-9.14.dmg
- main category:
- Math/Scientific
- developer:
- visit homepage
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