LAMARC for Mac

5.6 MB   258 downloads
2.1.10 100% FREE Apache    
  UNRATED
Likelihood analysis with metropolis algorithm using random coalescence

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LAMARC is an open source and free command line based tool which estimates population-genetic parameters such as population size, recombination rate, population growth rate, and migration rates.

Moreover, LAMARC is a utility for doing Likelihood Analysis with Metropolis Algorithm using Random Coalescence.

LAMARC estimates effective population sizes, population exponential growth rates, a recombination rate, and past migration rates for one to n populations assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes.

In addition, LAMARC can use DNA or RNA sequence data, SNPs, microsatellites, or electrophoretic data.

The LAMARC program can produce: estimates of recombination rate, migration rates between each population pair, population sizes (assuming constant mutation rates among loci), population exponential growth rates, profile likelihood tables, and percentiles.
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Last updated on September 7th, 2014
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