Gitools is a unique, easy to use framework for analysis and visualization of genomic data.
Data and results are represented as browsable heatmaps. Gitools allows to import data directly from IntOGen and Biomart.
Gitools is written in the Java programming language.
Requirements:
· Java 1.6 or later
What's New in This Release: [ read full changelog ]
IGV search:
· Integrative Genomics Viewer (IGV) is a very powerful genomic browser that provides a complementary visualization of multidimensional genomics data to that of interactive heatmaps. Often it is useful to explore this type of data with the two tools at the same time. With that idea in mind we did a first step to integrate the two types of views. Using the IGV interface for other applications to send commands, Gitools can now locate any position within the human chromosome in your opened instance of IGV. In the screenshot we have the focus on the gene CPM (with the Ensembl id ENSG00000135678). If you click the link “Locate Id in genomic viewer (IGV)” in the left details panel, Gitools will locate the gene within IGV. If you have many genes selected, then Gitools will tell IGV to show them in split screen view.
Display name in color labels:
· As of version 1.7.0 it is possible to directly display the label name if you choose to add a header of the type Colored Labels from annot...
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