ERNE for Mac

712 KB   307 downloads
2.1 100% FREE GPL    
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Take advantage of an extensive set of tools designed to handle short reads by employing this extended randomized numerical aligner

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changelog

ERNE is an easy to use short string alignment application that provides a unique set of tools for handling short reads.

It has multiple components, including ERNE-MAP, ERNE-DMAP, ERNE- BS5 and ERNE-VISUAL.

ERNE is based on rNA, a sensitive and highly performing aligner for Illumina reads.

We present ERNE 2 (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE 2 (a.k.a. bw-erne) uses the Burrows Wheeler Transformation (BWT) to reduce memory requirements preserving its speed and accuray. ERNE 2 comprises ERNE-MAP (core alignment tool/algorithm), ERNE-BS5 (bisulfite treated reads aligner), ERNE-FILTER (quality trimming and contamination filtering), and parallel version of the aligners (ERNE-PMAP and ERNE-PBS5). The alignment core supports indels and one long gap.
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Last updated on October 1st, 2014
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ERNE - Help screen for the application when running it from a terminal window.ERNEERNEERNE

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