ERNE iconERNE 1.4.4

Extended randomized numerical aligner
ERNE is an easy to use short string alignment application that provides a unique set of tools for handling short reads.

It has multiple components, including ERNE-MAP, ERNE-DMAP, ERNE- BS5 and ERNE-VISUAL.

ERNE is based on rNA, a sensitive and highly performing aligner for Illumina reads.

Main features:

  • Fast and accurate mapping
  • Both single and paired ends reads support
  • DNA-seq, RNA-seq, and BS-seq ready
  • Multithreading
  • MPI-enabled
  • Automatic trimming using FASTQ quality
  • Automatic FASTQ version detection
  • Indels searching
  • Delta-alignment repeatition classification
  • Graphical User Interface

last updated on:
May 27th, 2014, 16:59 GMT
file size:
1.6 MB
developed by:
University of Udine
license type:
operating system(s):
Mac OS X
binary format:
Home \ Math/Scientific


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4 Screenshots
ERNE - Help screen for the application when running it from a terminal window.ERNEERNEERNE
What's New in This Release:
  • improvement: added new parameters and features to erne-meth
  • bugfix: samtools/picard use bam_reg2bin(-1,0) instead of 0 for bam.core.bin (
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