ERNE for Mac

712 KB   307 downloads
2.1 100% FREE GPL    
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Take advantage of an extensive set of tools designed to handle short reads by employing this extended randomized numerical aligner





ERNE is an easy to use short string alignment application that provides a unique set of tools for handling short reads.

It has multiple components, including ERNE-MAP, ERNE-DMAP, ERNE- BS5 and ERNE-VISUAL.

ERNE is based on rNA, a sensitive and highly performing aligner for Illumina reads.

We present ERNE 2 (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE 2 (a.k.a. bw-erne) uses the Burrows Wheeler Transformation (BWT) to reduce memory requirements preserving its speed and accuray. ERNE 2 comprises ERNE-MAP (core alignment tool/algorithm), ERNE-BS5 (bisulfite treated reads aligner), ERNE-FILTER (quality trimming and contamination filtering), and parallel version of the aligners (ERNE-PMAP and ERNE-PBS5). The alignment core supports indels and one long gap.
Last updated on October 1st, 2014
ERNE - Help screen for the application when running it from a terminal window.ERNEERNEERNE

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