ERNE 2.0

Extended randomized numerical aligner

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What's new in ERNE 2.0:

  • bugfix: read 1 insert size is not computed
  • bugfix: reads 2s are incorrectly marked as primary/secondary when all multiple-hit alignments are printed
  • bugfix: does not compile on OSX (see https://github.com/tsuna/boost.m4/issues/19)
  • changed: BWTIL library integrated (new BWT algorithm)
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LICENSE TYPE:
GPL 
FILE SIZE:
1.6 MB
USER RATING:
UNRATED
  0.0/5
DEVELOPED BY:
University of Udine
CATEGORY:
Home \ Math/Scientific
4 ERNE Screenshots:
ERNE - Help screen for the application when running it from a terminal window.ERNEERNEERNE
ERNE is an easy to use short string alignment application that provides a unique set of tools for handling short reads.

It has multiple components, including ERNE-MAP, ERNE-DMAP, ERNE- BS5 and ERNE-VISUAL.

ERNE is based on rNA, a sensitive and highly performing aligner for Illumina reads.

Last updated on October 1st, 2014

Runs on: Mac OS X (-)

feature list

#numerical aligner #short read handler #sequence mapper #aligner #mapper #sequence #short read

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