CCdeep

Chromatin Conformation deep analysis

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LICENSE TYPE:
Freeware 
FILE SIZE:
774 KB
USER RATING:
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DEVELOPED BY:
lunacab
CATEGORY:
Home \ Math/Scientific
1 CCdeep Screenshot:
CCdeep - The CLI shows you how to analyze Chromatin Conformation sequencing data.
The Chromatin Conformation deep analysis (CCdeep) tool allows you to analyze the Chromatin Conformation sequencing data from Hi-C experiments.

CCdeep can process the data based on several factors:
· filters out sequences with low quality, based on their distant mapping from the selected restriction enzyme site or their attachment to regions with low mappability
· produces an enumeration and quantification (raw and normalized) of pairs of fragment ends
· summarizes the visualization of the biased quantification (GC content, fragment length and mappability)

Detailed instructions on how to install and use the CCdeep utility on your Mac are available HERE.

CCdeep is cross-platform and it works on Mac OS X and Linux. Binaries for the Linux platform are available on the project's homepage.

Last updated on November 29th, 2012

Runs on: Mac OS X (-)

#analyze Chromatin Conformation #Chromatin sequencing data #Chromatin Conformation analysis #analyze #Chromatin #Conformation #sequencing

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