Alternative splicing and functional prediction analysis tool
AltAnalyze is compatible with any RNASeq data (exons and/or junctions), several Affymetrix splicing sensitive array types (Gene 1.0, Exon 1.0, junction) as well as many conventional array-types (e.g., Illumina, Agilent, Affymetrix).
AltAnalyze can be used either as a command-line or as a graphical user interface based app, and it requires no advanced knowledge of bioinformatics programs or scripting.
Alternative regulated exons can be subsequently visualized in the context of proteins, domains and microRNA binding sites with the Cytoscape Plugin DomainGraph.
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What's New in This Release:
- Numerous bug fixes (listed in FeaturesToImplement),
- Multiple new accessory tools added: interactive network analysis and visualization, 3D PCA, identifier translator, alternative exon viewer, Venn Diagram viewer, and file merger,
- MarkerFinder algorithm included to unique find marker genes for each condition,
- Customizable hierarchical clustering visualization options and associated ontology/gene-set/gene correlation/filtering options ,