ABySS-Explorer 1.3.4

Displays a sequence assembly using a graph
ABySS-Explorer - By accessing the main window of the application you will be able to access the main application functions.
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ABySS-Explorer is a free and easy to use, interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data.

ABySS-Explorer was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular contig connectivity and supporting paired-end read relationships.

last updated on:
December 17th, 2010, 1:58 GMT
file size:
1 KB
price:
FREE!
developed by:
Cydney Nielsen
license type:
Freeware
operating system(s):
Mac OS X
binary format:
Universal Binary
category:
Home \ Math/Scientific
ABySS-Explorer
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What's New in This Release:
  • Supports assembly files from ABySS 1.3.4
  • Supports reading FASTA index (*.fai) for generating NXX-plots and assembly statistics
  • 3 assembly types for the Navigator view: unitigs (aka single-end assembly), contigs (aka paired-end assembly), scaffolds
  • Fixes a bug where loading graph files takes a long time
read full changelog

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