MzidLib 1.3 / 1.4 Beta

MzIdentML library for manipulating data in the mzIdentML standard
MzidLib - The CLI tool provides detailed descriptions of the tools included in MzidLib.
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MzidLib is a free, open-source and cross-platform library that allows you to manipulate data in the PSI mzIdentML standard.

MzidLib comes both as a command line tool and as a GUI tool. Also, all routines will export a new mzIdentML file.

MzidLib includes:
· Omssa2Mzid (Omssa OMX to mzIdentML version 1.1 converter)
· Tandem2Mzid (X!Tandem XML to mzIdentML version 1.1 converter)
· Csv2Mzid (Converts Omssa CSV output to mzIdentML version 1.1) - this can be customized to convert other results in CSV format into mzIdentML
· emPAI - performs the emPAI quantitation protocol and inserts results into a new mzIdentML file
· FalseDiscoveryRate - calculates local FDR, q-value and FDRScore (http://onlinelibrary.wiley.com/doi/10.1002/pmic.200800473/abstract)
· Mzidentml2Csv - exports PSMs, proteins or protein groups to csv format.
· ProteoGrouper - performs protein inference on PSMs in mzIdentML files, outputting results in a new mzIdentML file containing ambiguity groups of proteins
· Thresholder - sets the passThreshold attribute on SpectrumIdentificationItem or ProteinDetectionHypothesis

MzidLib is a cross-platform utility capable of running on any operating system that comes with Java support (e.g. Mac OS X, Windows, Linux).

last updated on:
August 18th, 2013, 3:16 GMT
file size:
13.2 MB
price:
FREE!
license type:
Apache 
developed by:
MzidLib Team
operating system(s):
Mac OS X
binary format:
-
category:
Home \ Development \ Libraries
MzidLib
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MzidLib - You will be able to analyze mzIdentML data.

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