MzidLib 1.3 / 1.4 Beta

MzIdentML library for manipulating data in the mzIdentML standard

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LICENSE TYPE:
Apache 
FILE SIZE:
13.2 MB
USER RATING:
5.0/5 1
DEVELOPED BY:
MzidLib Team
CATEGORY:
Home \ Development \ Libraries
2 MzidLib Screenshots:
MzidLib - The CLI tool provides detailed descriptions of the tools included in MzidLib.MzidLib - You will be able to analyze mzIdentML data.
MzidLib is a free, open-source and cross-platform library that allows you to manipulate data in the PSI mzIdentML standard.

MzidLib comes both as a command line tool and as a GUI tool. Also, all routines will export a new mzIdentML file.

MzidLib includes:
· Omssa2Mzid (Omssa OMX to mzIdentML version 1.1 converter)
· Tandem2Mzid (X!Tandem XML to mzIdentML version 1.1 converter)
· Csv2Mzid (Converts Omssa CSV output to mzIdentML version 1.1) - this can be customized to convert other results in CSV format into mzIdentML
· emPAI - performs the emPAI quantitation protocol and inserts results into a new mzIdentML file
· FalseDiscoveryRate - calculates local FDR, q-value and FDRScore (http://onlinelibrary.wiley.com/doi/10.1002/pmic.200800473/abstract)
· Mzidentml2Csv - exports PSMs, proteins or protein groups to csv format.
· ProteoGrouper - performs protein inference on PSMs in mzIdentML files, outputting results in a new mzIdentML file containing ambiguity groups of proteins
· Thresholder - sets the passThreshold attribute on SpectrumIdentificationItem or ProteinDetectionHypothesis

MzidLib is a cross-platform utility capable of running on any operating system that comes with Java support (e.g. Mac OS X, Windows, Linux).

Last updated on August 18th, 2013

Runs on: Mac OS X (-)

requirements

#mzIdentML library #proteomics data #protein study #mzIdentML #library #proteomics #data

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